rs257543874 SNP Detail

Summary

• ID
  rs257543874
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51356639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGGG GGAGAGAGGG AGAGAGAGAG AGAGAGAAAT AGTGAGAAAG ACAGAGAATG
  TGATAAGGGA GAGTGAAAAG TAAAATAAAT GTTTAAAATA TAAAGGTGTT TAACCCCAGG
  ATATGTGTCC TAAAGGATGT GGCTTTTCTC TGAAGGAACT TGAGAGATAT GAGTGTTTAC
  S
  CAGTCATCTG CTCTTAGGAA ATTACAGAGG TTTCCCTTCT CATAATAGCT ATGATGTAGA
  AAACCCATGA CAGGAAGGAC CTGCCCTCAA GATGACAACT GCATATCTGA TGTTACAGGA
  CAGACATTTG TCAGACTGGC CCAAGAGAAC AGCTACGAAC ATTGCCTGGA CTCACCATGA
  TCGCCATGCT CACAGTGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379558	MGP_WTSI_10_51200349	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257543874					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379558	MGP_WTSI_10_51200349	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51356639 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	69 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	118 bp upstream
Rr431273	regulatory region 431273	within coordinates
Tssr93232	transcription start site region 93232	288 bp downstream
Tssr93233	transcription start site region 93233	270 bp upstream
Tssr93234	transcription start site region 93234	296 bp upstream
Tssr93235	transcription start site region 93235	589 bp upstream
Tssr93236	transcription start site region 93236	1075 bp upstream
Tssr93237	transcription start site region 93237	1114 bp upstream
Tssr93238	transcription start site region 93238	1138 bp upstream
Tssr93239	transcription start site region 93239	1163 bp upstream
Tssr93240	transcription start site region 93240	1180 bp upstream
Tssr93241	transcription start site region 93241	1202 bp upstream
Tssr93242	transcription start site region 93242	1242 bp upstream
Tssr97553	transcription start site region 97553	100 bp upstream