rs257543428 SNP Detail

Summary

• ID
  rs257543428
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCATGG ACTTGATGGA
  GGTCAGCCCT CAGCTGACAG TTGGGTCTGT CTTGTCAGTT TCAAGGTTCT GGTGTCCAAA
  GTTAATCCTT TCTCACATAG AAAAAAAAAT TACAAGACCC GGATGGCACG GGGGGGGGGG
  GGGTTCAGTT TTACTCACTT GCACTCACTT GCTCAGAGGT CATTTTTGTT TTAGAGTTTT
  M
  GAGTTTGCTG GAGTGTGATG GTAGCTGCCA GTATTTGATT TAAATTTACC TGGGAAATAA
  GAAAAGCCCA AAAAAGGTAT AAATGATGTG AATATCTCAC TCAGAGTCTG GTAGACTTGG
  CAGAGATGTG TCCTGTGCTA GTCTGTCCTG CTCACTGCCC CCCAGCAGGG GTTCCCATCC
  TCGGGAGACT CAACACTAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791545	MGP_WTSI_6_117122043	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257543428					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791545	MGP_WTSI_6_117122043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148986 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1402 bp distal
Rr637288	regulatory region 637288	406 bp proximal
Rr637289	regulatory region 637289	1841 bp proximal
Tssr58392	transcription start site region 58392	538 bp downstream
Tssr58393	transcription start site region 58393	519 bp downstream
Tssr58394	transcription start site region 58394	479 bp downstream
Tssr58395	transcription start site region 58395	1467 bp upstream
Tssr58396	transcription start site region 58396	1483 bp upstream
Tssr58397	transcription start site region 58397	1521 bp upstream
Tssr58398	transcription start site region 58398	1547 bp upstream
Tssr58399	transcription start site region 58399	1569 bp upstream
Tssr58400	transcription start site region 58400	1597 bp upstream
Tssr58401	transcription start site region 58401	1633 bp upstream
Tssr58402	transcription start site region 58402	1664 bp upstream
Tssr58403	transcription start site region 58403	1682 bp upstream
Tssr58404	transcription start site region 58404	1701 bp upstream
Tssr58405	transcription start site region 58405	1743 bp upstream
Tssr58406	transcription start site region 58406	1773 bp upstream
Tssr58407	transcription start site region 58407	1804 bp upstream
Tssr58408	transcription start site region 58408	1871 bp upstream
Tssr58409	transcription start site region 58409	1893 bp upstream
Tssr58410	transcription start site region 58410	1915 bp upstream
Tssr58411	transcription start site region 58411	1931 bp upstream
Tssr58412	transcription start site region 58412	1958 bp upstream
Tssr58413	transcription start site region 58413	1971 bp upstream
Tssr62617	transcription start site region 62617	1531 bp downstream
Tssr62618	transcription start site region 62618	1553 bp downstream
Tssr62619	transcription start site region 62619	1589 bp downstream
Tssr62620	transcription start site region 62620	1632 bp downstream
Tssr62621	transcription start site region 62621	1698 bp downstream