rs257528627 SNP Detail

Summary

• ID
  rs257528627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135496454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGGATG TGCCTCTGTT
  CCCTGGCCAT GGGGATAAAT AGGGCACCCA GAGAGACAGC CCAGGTCCAA GAAAGGCTGG
  TCCTGAGGCT GGAGCGCCCT CTGTCTGCAA GAAGGACACC TTCCTTTTCA ACGTCAACTG
  GCTGTGCTAG AGCCCGAAGA GGTATCTCTG AATTCACCCC TGAGACACAC ACACACACAC
  R
  CGCGCGCGCA TGCACCCATC CACCCAACAC CAGTGTACAG GTTCTATACC CAGTAGTCCT
  AAGTTTACTG GGACACAGGG CATGTCCAGA CAGAACACTG GCCCCTGGCA GCTCTGCCCA
  CAGCATCTGA GCCTTCTTAC AGCCACAGGA CACAGTGACA CAGCCACAGG TCAAACTGAT
  GGAAAGTGAG TCAGCAGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss363374969	MGP_WTSI_4_135325058	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs257528627					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363374969	MGP_WTSI_4_135325058	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135496454 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myom3	myomesin family, member 3			Intron
				Noncoding-Transcript-Variant
Rr602132	regulatory region 602132			within coordinates
Rr602133	regulatory region 602133			89 bp distal
Rr602134	regulatory region 602134			211 bp proximal