rs257525053 SNP Detail

Summary

• ID
  rs257525053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62579257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTCT CTTTTTTTTA
  ACTCTTAAGG AACAGAGAAC AACCTGCCTC TGTGCTCTGT CTTACTTTCC TTTTGCTCCA
  AGCTAGTCTC TAGAAAGGCT GCCACTCCCC AGCCATTGAG TGTTGGATGA TCTGCCAGAC
  ACTCCTGTGT GAGCCAGGCA TGGCTTCTAA CTCCTGCCCT TCGCTTTCTC TTTGACCTTC
  M
  CTAGAGCCTG ATGTGGTATG GTATCCCCTT AAGAATAGAC TCCTGCTCTA CCTAGTTTGT
  AGGTACTGGA TCTTCAAAAG GTTAAACTTG CTGAGATCAC ACAGCTAATG TCTGCACACA
  TTAGTGGGTC AACTGTTTCC TTGCAACCAC AGACCATTCA TTCCAGCTGA GAAGGCCTGA
  CAGGGCTGGG TCATCAGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142892	CHEV_4_62322054	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257525053					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62579257 () rs orientation: forward

Symbol	Name	Function Class
Gm52741	predicted gene, 52741	within coordinates
Rgs3	regulator of G-protein signaling 3	Intron
Rr398306	regulatory region 398306	493 bp upstream
Rr593377	regulatory region 593377	within coordinates
Rr593378	regulatory region 593378	602 bp proximal