rs257498512 SNP Detail

Summary

• ID
  rs257498512
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141448825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGCGGT AGTGCTAGCT
  AGGATGACGT GCACACAGGA TGGAGGAAGA GAAACAGCAG AGAAACAGCT TCACCCTCTG
  TAGACCTCAA GTCCTACCAA CAAATTCAAC TTAAAATTAC TCCCCATCAG CTGGCAATTA
  TAACTTGGGT CATCAAAACA CCCTACACAC ACACACACAC ACACACACAC ACAAAAATTG
  G
  AAAAAATTTT TAAAAAAAAC TTCAAAACTG AAAACTGAAC TTGGGCATGA TAGTGTATTC
  TTGTAATCCC AGCTGTACAG GAGCCTGAAG CAGGAGGGCT GCTGTCTGAG ACTAGCCTTG
  ACCCCACAGT TGAGACCTTG TCTCAAAAAC AACAACAACA ACAAAAAACC CAACAACAAC
  AACAAAAAAA ACCAAAGCAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389274	CHEV_4_141277429	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257498512					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141448825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15241	CpG island 15241	1218 bp proximal
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	1927 bp downstream
Rr603862	regulatory region 603862	1399 bp distal
Rr603863	regulatory region 603863	109 bp distal
Rr603864	regulatory region 603864	407 bp proximal
Rr603865	regulatory region 603865	1895 bp proximal
Tssr1364	transcription start site region 1364	1925 bp downstream
Tssr44360	transcription start site region 44360	1783 bp downstream
Tssr44361	transcription start site region 44361	1887 bp downstream
Tssr44362	transcription start site region 44362	1944 bp downstream