rs257498006 SNP Detail

Summary

• ID
  rs257498006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132245102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCCAGT TGGAGAGTTT
  AGTGAAACCC TATTCCCCAG TTCCAAAATG AAAAGTACAG AGATGAGGGG AGCTGGAGAG
  ACAGCTCAGC AGTTAAGAGC ACCAGCTGCT CTTCCAGAGG ACGTAGGTTC TAGCACCCAG
  TGTCTCACAA TCACTTGCAA TTGCAGTTCC AGAGAGTTCA ATGTCTTCTT CCAGCCGCCA
  Y
  GGGTACCAGG CATGCAAGTC ATGCATAGGC CTACATACAT GCAAGACACA CACACACATC
  GGAAAACTAA TTTAAGTAAA ACCAAGAAGT GCACTTTGAG GCCAGACATT TGGGGGTAGG
  GAGTAAGATG AGGGCTGGGG CGTGAGAGAG CTTGTATGCA TGTGTGTTCT CATGTGTGTC
  AAGGCACACC TGTGGAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333992	CHEV_4_132073706	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257498006					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132245102 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	1712 bp downstream
Rr377207	regulatory region 377207	1476 bp downstream
Rr600998	regulatory region 600998	1763 bp distal
Rr600999	regulatory region 600999	within coordinates
Tssr39372	transcription start site region 39372	1963 bp downstream