rs257448410 SNP Detail

Summary

• ID
  rs257448410
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104516307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCAGCAGG GGAGCAGCTG AAAGCCACTA
  CTCCATCAGT AGGAGGGGAG GTACAGTAGC AGGAAGGGAA GGGAAAGAAG ATGAAGCTAG
  GGTGCCCAAT GCCTTCCTAT GTGTCCAGAA CTAACTGTCC CAGACTTGAA AGGGAAACAT
  M
  CAAGTCCTGA GGTGACCCCA TTTTTATCCC CCACAAATCA GGAAATCACC TATGCTGATA
  GATGGGAGAA TCTTGAAGCA GAGCCTACGG CTATTCATCC TCATATCCAT AGCACAAAGG
  AGCCCCAAGA ACTCCAAGAG CTCCAAggtg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320445341	CHEV_2_104526119	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257448410					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104516307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	481 bp distal
Rr562107	regulatory region 562107	355 bp distal
Rr562108	regulatory region 562108	871 bp proximal
Rr562109	regulatory region 562109	1383 bp proximal
Tcp11l1	t-complex 11 like 1	Intron