rs257341451 SNP Detail

Summary

• ID
  rs257341451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTGGA GGCCGCCTAT
  CTGAGGGCCT GCCGGTCTCC TATCTAGCCT CTTATGGTAT CTTGTACTGT CAGCAAAGTG
  AAAATGGTCC CATCTCACAG ACTGAAAAAT GGAGACTCTC AGTCCCCGTG TGCACATGTT
  GAGTGCGCGT ACACACACCA CACACACACA CACACACACA CACAACATAA ATAAAAAAAT
  R
  TAATGAACAT TTAAAAGAAT CACCTTGCTC TGCCTCCCCT TACTGTTGGG GCCTGTGTAT
  TGGCTTCCAG ACAATTCCAC TAGACTCTTC CCTGGAACCT AGCAACAGCT TACATCATCA
  CCTGCTGCCA GGTGCGAGCC AACCTGGCAT ATGAGAGGGA CTGCTCATCT CCCCGCCTCC
  CCCCTTGCCA TCTCTGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363423232	MGP_WTSI_4_137323824	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	G	A	G	G	A	G	G	G	A	A	A	A	A	A	A	G	G	G	A	A	G	G	G	A	G	G	G	A	G	A	A	A	G	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257341451					SNP	A	A	A	G	G	A	G	G	A	G	G	G	A	A	A	A	A	A	A	G	G	G	A	A	G	G	G	A	G	G	G	A	G	A	A	A	G	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363423232	MGP_WTSI_4_137323824	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495220 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			1483 bp upstream
Rr602708	regulatory region 602708			1494 bp distal
Rr602709	regulatory region 602709			1250 bp distal
Rr602710	regulatory region 602710			919 bp proximal
Rr602711	regulatory region 602711			1724 bp proximal
Tssr44134	transcription start site region 44134			1465 bp upstream
Tssr44135	transcription start site region 44135			1443 bp upstream
Tssr44136	transcription start site region 44136			1408 bp upstream
Tssr44137	transcription start site region 44137			1754 bp downstream
Tssr44138	transcription start site region 44138			1785 bp downstream