rs257285888 SNP Detail

Summary

• ID
  rs257285888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32250999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTTTCT TTGCTCTTGC
  TTGTGAGTTT GTTTCTTCAA GTCAAGGTGT CTCTATGTAG CCCTGGTTGT CCTGGAACTC
  CCTCTGTAGA CCGGGCTGGC CTTGAACTCA GAGATCTGCC TATTTCTGCC TCACCAGTGC
  TGGCTCTGAG GCATTAATAC AGGATCTCAC TATGTATAGC CACTGACCTG GAACCATCTA
  R
  ACCAGGGTGG CCTTGAACTC ACAGAGACTC CTGGCCTCTG CCTCAAGATT AAAGGTGCAT
  GCCACCATGT CTAGCTTTTT GCTGTTGTTG CTTTTTTAGT TTGAGAAGTA GTGGGTTTGG
  ATTATTTGAG GTTTTTCTTT CTGTAATGAT TCTATGATTA AGGAACTGCA GAGAAGTAAG
  TGTAGAGTGA GTTAGGAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395858363	MGP_WTSI_16_32432267	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257285888					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395858363	MGP_WTSI_16_32432267	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32250999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	532 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404779	regulatory region 404779	1125 bp downstream
Rr514695	regulatory region 514695	1513 bp distal
Rr514696	regulatory region 514696	922 bp distal
Rr514697	regulatory region 514697	1432 bp distal
Rr514698	regulatory region 514698	319 bp distal
Rr514699	regulatory region 514699	1856 bp proximal
Tssr137979	transcription start site region 137979	1563 bp downstream
Tssr137980	transcription start site region 137980	1203 bp downstream
Tssr137981	transcription start site region 137981	1191 bp downstream
Tssr137982	transcription start site region 137982	1147 bp downstream
Tssr137983	transcription start site region 137983	1127 bp downstream
Tssr137984	transcription start site region 137984	1079 bp downstream
Tssr137985	transcription start site region 137985	901 bp downstream
Tssr137986	transcription start site region 137986	873 bp downstream
Tssr140804	transcription start site region 140804	1064 bp upstream