rs257260289 SNP Detail

Summary

• ID
  rs257260289
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148572427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCAGTG GAATGGGATG
  TTTGCAGGGG TTTCCTTACA CTTCTCGGTA GTCTACACAC TAAGAGTGCA AAGCAAGCAG
  AACCGGGGCA CTATTATAAA ATTTATCCAA CAATTTGAAT AGCAAATACT CTACGGTGCA
  TAAAATAGCC GAAGTATAAA ACAGCACTGT AAAGCAGTCT GAGAGAAATA GATCTCCCCC
  M
  CCCCAGCACA CAGAACCCCA GGATAGTGGG CAGCATGGAG ACTGAGGTAG AGATAAGCCA
  CCCACAGGGG CACTACAACC ACGCAAACCC CAGGGACTGT TCTGATGACA AGCACAGGAG
  GGCTACAGGA TTAAGCAGCT AAGGTTTTTT TTTTTTTAAT TTAAAATATA TCACAGTAAA
  ATTGTAACTA AGGCTAGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360179845	MGP_WTSI_3_148529755	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	C	A	A	C	A	A	A	A	A	A	A	A	A	C	A	C	A	C	A	C	A	C	C	C	C	C	A	A	A	C	C	C	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257260289					SNP	A	A	A	A	A	C	A	A	C	A	A	A	A	A	A	A	A	A	C	A	C	A	C	A	C	A	C	C	C	C	C	A	A	A	C	C	C	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360179845	MGP_WTSI_3_148529755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148572427 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr375898	regulatory region 375898	1031 bp downstream
Rr587218	regulatory region 587218	895 bp proximal