rs257222026 SNP Detail

Summary

• ID
  rs257222026
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149737306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACCAGATT CGCTAATTTA AAAAAAAATG
  TATCACTGAG TGAAATAATA TCCCAGTAAA CAAAATTAAT GTAAATTTAT CAATTCCTAG
  TTTTAAGGAA AGGGCTTTTA TGAGTTCATT GTAACTTTAA TAACTGCTTG ATTATATTTT
  W
  AAATAGTGTT TATGAAAGAG AATAAAGGAC AAAACCAGAT CTACAAATGA TCTACTTACT
  AAACAGTCTC CAGAACATGG AGAACAAGTA CTCACTTTAT TTAACTTCTG ATTTTTTTTG
  CCAACACTGA AAACCATCTG TCGGTTTCCA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320043140	CHEV_1_151708685	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257222026					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149737306 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1255 bp proximal