rs257220449 SNP Detail

Summary

• ID
  rs257220449
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAG TTTCTGTTTG GTTGCTTTTG
  K
  TTTTTGTTTG GTTTTGGTTT TTTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss641191302	FVB_NJ_6_117122760	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	T	G	G	G	G	G	T	G	T	G	G	G	G	T	G	T	G	T	G	G	G	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257220449					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	T	G	G	G	G	G	T	G	T	G	G	G	G	T	G	T	G	T	G	G	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641191302	FVB_NJ_6_117122760	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149703 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	74 bp distal
Rr637289	regulatory region 637289	1124 bp proximal
Rr637290	regulatory region 637290	1309 bp proximal
Rr637291	regulatory region 637291	1360 bp proximal
Tssr58392	transcription start site region 58392	1255 bp downstream
Tssr58393	transcription start site region 58393	1236 bp downstream
Tssr58394	transcription start site region 58394	1196 bp downstream
Tssr58395	transcription start site region 58395	750 bp upstream
Tssr58396	transcription start site region 58396	766 bp upstream
Tssr58397	transcription start site region 58397	804 bp upstream
Tssr58398	transcription start site region 58398	830 bp upstream
Tssr58399	transcription start site region 58399	852 bp upstream
Tssr58400	transcription start site region 58400	880 bp upstream
Tssr58401	transcription start site region 58401	916 bp upstream
Tssr58402	transcription start site region 58402	947 bp upstream
Tssr58403	transcription start site region 58403	965 bp upstream
Tssr58404	transcription start site region 58404	984 bp upstream
Tssr58405	transcription start site region 58405	1026 bp upstream
Tssr58406	transcription start site region 58406	1056 bp upstream
Tssr58407	transcription start site region 58407	1087 bp upstream
Tssr58408	transcription start site region 58408	1154 bp upstream
Tssr58409	transcription start site region 58409	1176 bp upstream
Tssr58410	transcription start site region 58410	1198 bp upstream
Tssr58411	transcription start site region 58411	1214 bp upstream
Tssr58412	transcription start site region 58412	1241 bp upstream
Tssr58413	transcription start site region 58413	1254 bp upstream
Tssr58414	transcription start site region 58414	1287 bp upstream
Tssr58415	transcription start site region 58415	1302 bp upstream
Tssr58416	transcription start site region 58416	1317 bp upstream
Tssr58417	transcription start site region 58417	1371 bp upstream
Tssr58418	transcription start site region 58418	1404 bp upstream
Tssr58419	transcription start site region 58419	1423 bp upstream
Tssr58420	transcription start site region 58420	1450 bp upstream
Tssr58421	transcription start site region 58421	1469 bp upstream
Tssr58422	transcription start site region 58422	1495 bp upstream
Tssr58423	transcription start site region 58423	1503 bp upstream
Tssr58424	transcription start site region 58424	1565 bp upstream
Tssr58425	transcription start site region 58425	1610 bp upstream
Tssr58426	transcription start site region 58426	1632 bp upstream
Tssr58427	transcription start site region 58427	1659 bp upstream
Tssr58428	transcription start site region 58428	1674 bp upstream
Tssr58429	transcription start site region 58429	1739 bp upstream
Tssr58430	transcription start site region 58430	1784 bp upstream
Tssr58431	transcription start site region 58431	1880 bp upstream
Tssr58432	transcription start site region 58432	1953 bp upstream
Tssr58433	transcription start site region 58433	1989 bp upstream
Tssr62617	transcription start site region 62617	814 bp downstream
Tssr62618	transcription start site region 62618	836 bp downstream
Tssr62619	transcription start site region 62619	872 bp downstream
Tssr62620	transcription start site region 62620	915 bp downstream
Tssr62621	transcription start site region 62621	981 bp downstream
Tssr62622	transcription start site region 62622	1533 bp downstream
Tssr62623	transcription start site region 62623	1551 bp downstream
Tssr62624	transcription start site region 62624	1666 bp downstream
Tssr62625	transcription start site region 62625	1817 bp downstream
Tssr62626	transcription start site region 62626	1913 bp downstream
Tssr62627	transcription start site region 62627	1944 bp downstream