rs257204796 SNP Detail

Summary

• ID
  rs257204796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102914796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGAATAGA ATGCAAACTC AAGAGAAGtt
  ttttttttaa gatttattta tttattatat gtaagtacac tgtagctgtc ttcagacact
  ccagaagagg gcgtcagatc ttgttacaga tggttgtgag ccaccatgtg gttgctgaga
  Y
  ttgaactcct gaccttcgga agagcagtcg ggtgctctta cccactgagc catctcacca
  gccccTCAAG AGAAGTTTTT AAAGCAAGAA ACTATACAGG ACTTCTTCTA GAAGAACTTT
  ACTGTTCCAC AGCCTGATTG TGTGCGGCCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320441588	CHEV_2_102924608	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257204796					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102914796 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apip	APAF1 interacting protein			Intron
				Noncoding-Transcript-Variant
D2Mit388	DNA segment, Chr 2, Massachusetts Institute of Technology 388			1775 bp proximal
Rr561794	regulatory region 561794			43 bp distal
Rr561795	regulatory region 561795			44 bp proximal