rs257170996 SNP Detail

Summary

• ID
  rs257170996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107556855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAATCT CACAGGGCAG
  AGACGCTCTC TCTCACCTCC AATCACACGG CTGCCACAGG CTCCGCTGGT TCTCCAGGTG
  CCATTGGGAT TCTGCCAAGT TAGCATCCTG TGTCTCTGTC CCCTGGGTGG CCCGTGAGCC
  CTGTCTGCAT GGCTAGTTTA AATTGAGATG TGCTGAAAGT ATAAAATACA GACCAGATTT
  Y
  AAAGATACTG TACAGGAAAA AAAAGAAAAA AAGAATGCAA ATGGCTCCAA ACTTTTGTAT
  AGAATACATA TTGAAATAGT TAAGTCACCT TTTATTGTGG CTCTTCACTG TTTTAATGTG
  GCTGCCAGAG AGTCTGAAAT TACATGTCTA TCTTCCCCTG AACAGTTCTG TTTCAACGGT
  CTGCTCAGTC CTCTGCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250128	CHEV_4_107372263	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257170996					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107556855 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm54855	predicted gene, 54855	1704 bp upstream
Gm70287	predicted gene, 70287	within coordinates
Rr597043	regulatory region 597043	1468 bp proximal
Rr597044	regulatory region 597044	1648 bp proximal