rs257144947 SNP Detail

Summary

• ID
  rs257144947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114817939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCTAGGAA GAGGTTTTTA TATCCCCCCA
  CCACCACCTG TCCATCTGCT TTCTTTTGTC TGAGACCCTT TTGCTGTAGG GCAAAAGCCA
  CCTCAAAAGA GACCTTGCAT GTCCTTGCTG GAGTCAGTAG AGAACTGGGA TGGGGAAGGC
  R
  CTGGCAACCA TCTGCTGTGT TCTTGCCTTT CTCCTAACTA AAATAGTCTG CAAAGTGATG
  GAGATGCTGG GGGGATTCCT AGGGACACTC GTGAATCATG GGCTCCAAGA TGAGCTGACT
  GAGGTGCAGA GTTGTGCAGA GTAACGGAAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914872	CHEV_6_114790996	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257144947					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114817939 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			676 bp upstream
Rr636840	regulatory region 636840			1717 bp distal
Rr636841	regulatory region 636841			497 bp distal