rs257132353 SNP Detail

Summary

• ID
  rs257132353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:110145688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTTTCTA CGACAGAGAA GGGTGAATGA
  TTTATTTAAA TGAATTTATT TTCCAACTTA GGGGCATGCT CTGCATTTAA AAAAAATATA
  CTCACTTTTG CTTTCCCTAC TGTGGTGAGG GTAAAATATG ATTCGGAAAT TAAAGAGCCT
  Y
  ATGTTTATTA CGTGTGCAGA CCACTCCTTT TGCTCAGCTG AACAGGAGGT ATTTTGCCTC
  TCCCTTCGCT TCTTTCCCCA GCCCCTGCTT TCTTACAAGA GGTACAAAGG GACAATTAGC
  AAGTATGAGG TGGTGTATAT AGACTGTATG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255941	CHEV_4_109961096	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257132353					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110145688 () rs orientation: forward

Symbol	Name	Function Class
Elavl4	ELAV like RNA binding protein 4	Intron
Rr597418	regulatory region 597418	1613 bp distal
Rr597419	regulatory region 597419	1112 bp distal
Rr597420	regulatory region 597420	474 bp distal
Rr597421	regulatory region 597421	1771 bp proximal
Tssr42786	transcription start site region 42786	1961 bp upstream
Tssr42787	transcription start site region 42787	1874 bp upstream
Tssr42788	transcription start site region 42788	1850 bp upstream
Tssr42789	transcription start site region 42789	1605 bp upstream
Tssr42790	transcription start site region 42790	957 bp upstream