rs257123388 SNP Detail

Summary

• ID
  rs257123388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28750117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC ACGGCAGTCT TGGACTCCCA
  R
  GTACAGCCCC GCGATGAAGA CAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320690839	CHEV_3_28594890	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257123388					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28750117 () rs orientation: forward

Symbol	Name	Function Class
Rr574615	regulatory region 574615	671 bp distal
Rr574616	regulatory region 574616	within coordinates
Rr574617	regulatory region 574617	1800 bp proximal
Rr574618	regulatory region 574618	1946 bp proximal
Slc2a2	solute carrier family 2 (facilitated glucose transporter), member 2	1935 bp upstream
Tssr28652	transcription start site region 28652	227 bp downstream
Tssr28653	transcription start site region 28653	1933 bp upstream
Tssr28654	transcription start site region 28654	1978 bp upstream