rs257112102 SNP Detail

Summary

• ID
  rs257112102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141687573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTATTTA TATCATGTAA
  AATCGGAAGT TACGGACAGG CAGGCTTCAG TCTGATAGCC GAGAGAGCAT GAAATCAGGG
  TTTGAGCGCG GCTGCCACCC ACCCATACTC GGGACACTAA GAAGTGCCAT GCATTCTCAA
  CAGGAGTCCA CAAACCTCCA CCGCCTCCAA GAACACTCAT GGGAGCAGGC GGCCCCTCCT
  Y
  ACAGCTGTAC CAAGCCCCAC AGCCCTCTGC CCACTGATGC AGAGCAGCCA ACCGGGAGGG
  AGGTGGGCTT TACAAGTAAA AGCCAGCCTA AACTGGTTAA TCCCTTACCT CTTCACTTAT
  GGCCGGGTTG CTCCTTTAAC TTTTTGTTTG CTCTCTTGTC ATAGCTCAGC GCCAAATGGT
  TGTGATTCAG CCGAAGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320997333	CHEV_3_141644776	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257112102					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141687573 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
Rr586376	regulatory region 586376	within coordinates
Rr586377	regulatory region 586377	309 bp proximal
Rr586378	regulatory region 586378	442 bp proximal
Tssr35923	transcription start site region 35923	394 bp downstream
Tssr35924	transcription start site region 35924	412 bp downstream