rs257109401 SNP Detail

Summary

• ID
  rs257109401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30909785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAACTGCT TAGTGGCTCA
  AGTCTTGTGG TCTTGGGAGC ATATTCGTCT GCAGACTGAA AGGTAAACTT GAGAAACTAG
  CTACAGAGCA AGAGGTGGTG GGTGACACAA CGGCAGTTAG GAGCATTTCA AACTGGGATT
  AGATCCTCAA AGCCTGACAC ACTAGGAAAG AGTTTCCCCT CACCCTGCAA CTCCTGCAAT
  Y
  TTCTGCCTAC TCAGTCGGTC AACTCGGTCG CCTCTTGTCG CCCAACCCGC AGGGGGCGTC
  CTACGCACTG TCAACTCGGA AGTGCCCGCA TGCAAGCTGT TTTTTCCAGT ATGAGCTAGA
  TGGAAGACCA CAGTGTGGAG TCACGCACCT TACCCTGAGC AGTCTGGGCC TGACTACTGA
  AAGAAAAGAA GAGCATCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357427623	MGP_WTSI_3_30754558	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257109401					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357427623	MGP_WTSI_3_30754558	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30909785 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	within coordinates
Gpr160	G protein-coupled receptor 160	314 bp upstream
Rr574830	regulatory region 574830	825 bp distal
Rr574831	regulatory region 574831	within coordinates
Rr574832	regulatory region 574832	275 bp proximal
Rr574833	regulatory region 574833	390 bp proximal
Rr574834	regulatory region 574834	722 bp proximal
Tssr28695	transcription start site region 28695	94 bp upstream
Tssr28696	transcription start site region 28696	310 bp upstream
Tssr28697	transcription start site region 28697	368 bp upstream
Tssr28698	transcription start site region 28698	378 bp upstream