rs257104538 SNP Detail

Summary

• ID
  rs257104538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99564943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGTAGA AACAGAAGAG
  TTGAATTATG GAAACAAAGG CTTCTCATAG TTTTCTACCA TTGCATCAGC ACCTAAGTAT
  CAAACTAGTG TATCTTTAGA TTGGTTCATG CTACAATGAT TTAAAAATAA AACACTGCTA
  TTTGAGTTAA CGTCTTGAGC TTCAGGGGAA AAATGTTTAA GAAATTTGGG GTTGGAGCTT
  R
  GAAATAATTG CCAATAATTT CTGAAATGGC AAGAACCTAC CTCACAAAAA CAAAAGAAAA
  GTCTCAAGTC ATCACTAAGG AATGGAGATT GCTGGCTATC AGTGGCGAAT GGGGAGCCAG
  CAGGCATTTC TACTTAGCTC CTGCTGAGTG GAATTCCGGG CCTGAGAAAT CACTGTGCTA
  GCAAGGCCGT GGGTAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389674794	MGP_WTSI_13_100198390	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257104538					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389674794	MGP_WTSI_13_100198390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99564943 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Intron
Tssr4149	transcription start site region 4149	1157 bp upstream
Tssr123695	transcription start site region 123695	1097 bp upstream
Tssr123696	transcription start site region 123696	1456 bp downstream
Tssr123697	transcription start site region 123697	1646 bp downstream
Tssr123698	transcription start site region 123698	1777 bp downstream
Tssr123699	transcription start site region 123699	1868 bp downstream
Tssr123700	transcription start site region 123700	1893 bp downstream
Tssr123701	transcription start site region 123701	1951 bp downstream
Tssr123702	transcription start site region 123702	1971 bp downstream