rs257103039 SNP Detail

Summary

• ID
  rs257103039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:6215196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGTCTCT CCAAGCAACT
  GGTCTATCTT TGTTTTGGCA GCTAGACAAT GCTGTCACCT GTGCCAAGCA CACGTTTGGT
  TTCTATTAAT CTAAGTTCAT CTTACTTTCT CGTTATTTGT TTGTTGTTGC TGTTGTTGTT
  GAAGACAGGG TTTTTTAGTT TAACAGCTCG TGTCTATCCT GGAATTCACT TTATAGAGCA
  R
  GCTGGCCCCT GCCTCCAATG CACTGGGATT AAACCTGTGT GCCACAATGC CCAGCTTCTC
  CTTACCTTCT CTTTATCCTG ACTTTCTCAT CCACTTACAG TTGGTTTTGT TATATCCTAT
  TGGAAGGTAT TCTATATCTA TATATGTCAG CCATCCGAAC TGAAGAGAGG TGACTGTCAG
  TGAATAAATA ACAAAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321731366	CHEV_6_6165196	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257103039					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6215196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17135	CpG island 17135	1464 bp proximal
Rr378879	regulatory region 378879	1737 bp downstream
Rr626224	regulatory region 626224	1931 bp distal
Rr626225	regulatory region 626225	1006 bp proximal
Rr626226	regulatory region 626226	1912 bp proximal
Slc25a13	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	Intron
Tssr59765	transcription start site region 59765	154 bp downstream
Tssr59766	transcription start site region 59766	1827 bp downstream
Tssr59767	transcription start site region 59767	1932 bp downstream