rs257097668 SNP Detail

Summary

• ID
  rs257097668
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106456762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCATGT TACTCTTCCT
  GTCTACTTTG GTTTCTCACT TGTCTCCGAA AGACTCTTAA CAATATTTTA AGCCCTGCCT
  TGCTTCTAAG CAGTCAGTTT AAACAGCTAG AATCTTCAAA GCCTAAACAC ATACAAGTAT
  TTAATACCTC AAAAAAATTA TATGCAGCCA TGTATGGGTA GTTATGACTG CAATTTATGA
  W
  TTGTTATAGT ATTTTATACT TATATTTCAC ATAGAATACT ACATCCCAGA AATTTGAAAT
  TTGCCTGAAA CTCAATAATT AGAAAGTGTT AATTATGGAT TTTTTTAAAA AAAGATAACA
  TCCAGGGGTT AGGGAAATGC TGTGCCAAAC AATAAGAAAA TTGACTTCCT ACAATTAAAA
  CTTTTTTTAA AAATTACCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359130158	MGP_WTSI_3_106352364	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	T	A	T	A	A	A	T	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257097668					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	T	A	T	A	A	A	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359130158	MGP_WTSI_3_106352364	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106456762 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	1644 bp upstream
Cpgi13666	CpG island 13666	1085 bp distal
Dram2	DNA-damage regulated autophagy modulator 2	Intron
Rr375539	regulatory region 375539	393 bp downstream
Rr582855	regulatory region 582855	1875 bp distal
Rr582856	regulatory region 582856	1564 bp distal
Rr582857	regulatory region 582857	672 bp distal
Rr582858	regulatory region 582858	132 bp distal
Tssr31115	transcription start site region 31115	1732 bp downstream
Tssr31116	transcription start site region 31116	1708 bp downstream
Tssr31117	transcription start site region 31117	1558 bp downstream
Tssr34981	transcription start site region 34981	1868 bp upstream
Tssr34982	transcription start site region 34982	1853 bp upstream
Tssr34983	transcription start site region 34983	1723 bp upstream
Tssr34984	transcription start site region 34984	1665 bp upstream