rs257097382 SNP Detail

Summary

• ID
  rs257097382
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152515353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCATTA GGGAGTGTCA
  CTGGAGAACG TCAGAAGCAA TTGGTGAATG AGAGAGCCCC ACAGGGTCGG CGGCGTTGGA
  GGCTGCAAGT CCATTAGCGT CTATTAGGGA GTTTTCATCC TGTGGCAGAG GCTAAATTAT
  TCACGAGTAC CTTTCTCCTA AAAGCTCGGG AAGTGCAGTG CCACGCTACA GCCTGGCAAT
  A
  CCGACGTCCT GGAGGATGGT TGGGGTGCGG CGAGAGGTGG GGGTCCTGCC CCCTCCCATG
  GTCTCCCCTT TGCTGCCTTT GTGTCAGAGG CCTGGGTCTT CTGAGCCACA GGTAGGAAAG
  AGCTGGCTGG GCTGTTCTTT ATTTGAATGC CAGGCACACG GCTCACACGG CTTGTCCACC
  CCATTCCACG CTGTGTCTGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434647	CHEV_4_151805005	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257097382					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152515353 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D4Mit356	DNA Segment, Chr 4, Massachusetts Institute of Technology 356			804 bp distal
Kcnab2	potassium voltage-gated channel, shaker-related subfamily, beta member 2			Intron
				Noncoding-Transcript-Variant
Rr605873	regulatory region 605873			1490 bp proximal
Rr605874	regulatory region 605874			1572 bp proximal
Rr605875	regulatory region 605875			1619 bp proximal