rs257092092 SNP Detail

Summary

• ID
  rs257092092
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155379791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGCAAA CCCTAGTGCC
  TTCCGTCTCT GTCTCACTCA GTGCTGGGGT TGCAGGCATG CCTGGCCAAG CCTGCCTTGC
  TTGTTTTGTG GGTGCTGGGA TCTAAACTCA GGCTCTCAAG GTCGTGCAGC AAGCCCTCTC
  GGCCACTGAG CCATCTCTCC AGCCCAATCT TAAACTTCTG GCTGCCCTGC CTCTGTTTCC
  K
  TGAGTGCTGG GATCACAGGC ACTGTGGCGC CTCCTGGGGG TGGAATTCTG GGACTTGACT
  CTGCGAGAGC AACCACTCTG CATATTGAGA GATATCTCCA GGGATAGACT GAGCTCTATC
  AGCAGCCTCT CGAATCTTTT GGGGGAAAGG TCTTGATATA TAGCCCAGGC TTGTCTTAGC
  CTCAGTGCTG TGCTTACAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441560	CHEV_4_154669443	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257092092					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155379791 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			343 bp proximal
Rr606444	regulatory region 606444			918 bp proximal
Rr606445	regulatory region 606445			1659 bp proximal
Rr606446	regulatory region 606446			1956 bp proximal