rs257085030 SNP Detail

Summary

• ID
  rs257085030
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:148716376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT TCTACAGTGC TACCAAAACA
  K
  CAAGGCAGCA CAGGCAGTGC TCAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320557219	CHEV_2_148700192	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257085030					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148716376 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cst3	cystatin C			Intron
				Noncoding-Transcript-Variant
Rr374041	regulatory region 374041			within coordinates
Rr566976	regulatory region 566976			1076 bp proximal
Rr566977	regulatory region 566977			1110 bp proximal
Tssr20681	transcription start site region 20681			1565 bp downstream
Tssr20682	transcription start site region 20682			692 bp upstream
Tssr20683	transcription start site region 20683			768 bp upstream
Tssr26685	transcription start site region 26685			1550 bp upstream
Tssr26686	transcription start site region 26686			1517 bp upstream
Tssr26687	transcription start site region 26687			1386 bp upstream
Tssr26688	transcription start site region 26688			965 bp downstream
Tssr26689	transcription start site region 26689			996 bp downstream
Tssr26690	transcription start site region 26690			1148 bp downstream
Tssr26691	transcription start site region 26691			1167 bp downstream