rs257032924 SNP Detail

Summary

• ID
  rs257032924
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95787018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTAAGTG CCAGGTCTTG
  TAGCACCTCC AAGGACAGAT TCACCTCTTC CTGAATAATT GGGCTTGATT CACATGATGA
  GCTGACATAA GCTTTGCAGT TCCAGGACGG ATCCTTCTCT TGATCTTGTT CTCACTGTTG
  TCCACTGAAC AGCGGGAGAA GCTGAAGCTC TCATTCCTGG TCATCCCCCT TGCCCCCCCC
  S
  CCCCCCCCCC CCGTGTTCCT GCAAGGAGAA GGCAGCTCTG TGCAAATAGT CTCTAGATTC
  TCAGGGCCCA GGAGCAGCCC CTTGGGGGTA GAGGAATTCC ATTACTCCAC CTGGTGTCGC
  TTGCTCTCCT CTGGAGCCGG AAAGGGCCTC AGGAGACAGC TGTGGGGTCA CCTCGGCTGT
  ACTGTTCAGA TCCTCAGTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CZECHII/EiJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ
ss362490642	MGP_WTSI_4_95565472	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	C	G	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CZECHII/EiJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ
rs257032924					SNP	C	C	C	G	C	G	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362490642	MGP_WTSI_4_95565472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95787018 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr376869	regulatory region 376869			444 bp upstream
Rr595486	regulatory region 595486			1742 bp distal
Rr595487	regulatory region 595487			1452 bp distal
Rr595488	regulatory region 595488			803 bp distal
Rr595489	regulatory region 595489			1296 bp distal
Rr595490	regulatory region 595490			1629 bp proximal