rs257030556 SNP Detail

Summary

• ID
  rs257030556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98812490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG GCCATGACCG GGTAAGGAGC
  R
  CCCGGGGTTC AGGGCCCGGG GCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222362	CHEV_4_98590944	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257030556					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98812490 () rs orientation: forward

Symbol	Name	Function Class
Rr398351	regulatory region 398351	741 bp downstream
Rr595805	regulatory region 595805	1934 bp distal
Rr595806	regulatory region 595806	364 bp distal
Rr595807	regulatory region 595807	622 bp distal
Rr595808	regulatory region 595808	within coordinates
Rr595809	regulatory region 595809	1077 bp proximal
Tssr37901	transcription start site region 37901	1316 bp downstream
Tssr37902	transcription start site region 37902	577 bp downstream
Tssr37903	transcription start site region 37903	510 bp downstream
Tssr37904	transcription start site region 37904	476 bp downstream
Tssr37905	transcription start site region 37905	411 bp downstream
Tssr37906	transcription start site region 37906	360 bp downstream
Tssr37907	transcription start site region 37907	277 bp downstream
Usp1	ubiquitin specific peptidase 1	Intron