rs256979601 SNP Detail

Summary

• ID
  rs256979601
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163379808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGGGT CCCTGGTTTG
  GCACCTTGCT CACCTTTTAG CCTCTCTGGG GATTTCAGAC CCCAAATGCC CTGGCAATCC
  AGTAACCAGG AGGGAAATTT AAACCCCAGG GGCTGGGGAT GCAGCTGGTA GAACACTTGC
  TTGCTTGCCT ACCGTGGGTG AAGCTCTGTG TTCTTTCTGT ATTCAGCACT GAATAAAGCA
  S
  ACCCGACGGT GCACACCTGT CATCCTAGTA TTTAGAAAGC ACAGTCAGGA GGACCAGAAG
  TTCAAGGTCA CTCCCACTAG TTAGCGAGTT TAAGGCCAGC CTAAGCTACA TATACAAAAC
  CCTACCGAAA AATAAAAATC TGAGACTTGA CTCCCTGGGA AACCGAGGCT CCCTGGCTGA
  GCCGGCTCTT CCTTAGCCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603583	CHEV_2_163363624	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256979601					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163379808 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569403	regulatory region 569403	1869 bp distal
Rr569404	regulatory region 569404	1359 bp proximal