rs256960199 SNP Detail

Summary

• ID
  rs256960199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGAGT TCCAGGACAG
  CCAGGGCTAC ACAGAGAAAC CCTTTCTCGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA AAGAAAGAAG GAAAGAAAGA AAGAAAGAAA GAAAGAAAGG AAGGAAGGAG
  ATGTAGAACT CTCAGCTCCA CCTGCACCAT GCCTGTCTGA ATGCTGCCAT GCTCCCACCT
  R
  CCTTGAAGAT AATGGACTGA ACCTCTGAAC CTATAAGCCA GCCTCAATTA AATGTTCTCC
  TTATAAGACT CGCTTTGGTC ACGGTATCTA CTCGTAGCAG TCAAACCCTA ACTAAGACGG
  TGCTCACAGT TGCAAAGCAG GCAACAGAGT TATCTCCTCA GCCCTGAAGT GTCTACTTAA
  AAAATTTTAA AGTTACATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360108862	MGP_WTSI_3_145769333	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A	G	G	G	A	G	A	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256960199					SNP	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A	G	G	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360108862	MGP_WTSI_3_145769333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			1622 bp upstream
Rr586924	regulatory region 586924			776 bp proximal
Rr586925	regulatory region 586925			1751 bp proximal
Tssr36027	transcription start site region 36027			1620 bp downstream
Tssr36028	transcription start site region 36028			1640 bp downstream
Tssr36029	transcription start site region 36029			1678 bp downstream