rs256930582 SNP Detail

Summary

• ID
  rs256930582
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77648772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTGAGG GTGCTTCGGA
  GGCCTCCACC CAACACTTTT AACTGTTCTT GGAGGGGAAG AAAATGAGCA AGCCCTATGG
  ACTGAACACC TGTGAGAAGT GTTCCCCATG GCTTGCACAG TTTAGCAGGA TTTGCAGTTT
  TTATGTCCTG CAATCTGCAA CTACATCCTC CTCTCCTCTC TGTCTATTTT TAATCACTTA
  K
  AGCTGAGATG TATGGTAGAA AATAATTTGA GGGTTGCAAT TCCTAACAAT AGCTGAAAGA
  AGCATAAAAT ATTTGCAGAC GAGTCTCAAA TTATTTTTAA CCTGTGACCT AAGAGATAAA
  GAACTATGTC TTTCATGTCC CTTAACCAAG GCAGAATAGC GGCTTCTGGA AGCTCACACC
  CCAAAACAAT CGGTACACTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354554545	MGP_WTSI_2_77656485	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256930582					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354554545	MGP_WTSI_2_77656485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77648772 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11837	CpG island 11837			1100 bp distal
Rr559844	regulatory region 559844			1623 bp distal
Rr559845	regulatory region 559845			679 bp distal
Rr559846	regulatory region 559846			1419 bp distal
Rr559847	regulatory region 559847			1350 bp distal
Tssr24865	transcription start site region 24865			1800 bp upstream
Tssr24866	transcription start site region 24866			1737 bp upstream
Tssr24867	transcription start site region 24867			1701 bp upstream
Tssr24868	transcription start site region 24868			1680 bp upstream
Tssr24869	transcription start site region 24869			1613 bp upstream
Tssr24870	transcription start site region 24870			1497 bp upstream
Tssr24871	transcription start site region 24871			966 bp upstream
Tssr24872	transcription start site region 24872			934 bp upstream
Tssr24873	transcription start site region 24873			746 bp upstream
Zfp385b	zinc finger protein 385B			Intron
				Noncoding-Transcript-Variant