rs256919469 SNP Detail

Summary

• ID
  rs256919469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163382098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCAACTG TGTGAGCTTG
  GGTGAAGAAC TCAACCTCTC TGGGCCAGCT GTCTTAACAA ACCGCTCATG AAAACGCCCA
  GCATCAGAGC AGCGTGAGAA TTCAGGAGCG AAGCTCCTGA CACAGATGTC CACGCCATTC
  ATGTCTCTGA CGCCATTCGT CCTTGTGGGA CAATTAGAAC ATAGGCATTT TCTCAACTTA
  Y
  AGGGAAGAAA CTGAAGCTGA AGGGTCCAGA CAGTCTGGGA AGGGCTCTGG CTTCTGTGTG
  TCTCTAAGGG CTGGATGCTT CCAGAGGTAG GACATAGCCA AGATTAGGAG GTGCCCCTGC
  CTCACATTCC TGCTGCTGGG ACTACTCAGA GACCTACAGG ACACAGATGC CATCCCCTAA
  CTTGGGCCTC TGGTGGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603600	CHEV_2_163365914	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256919469					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163382098 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	230 bp distal
Rr569405	regulatory region 569405	50 bp proximal
Rr569406	regulatory region 569406	614 bp proximal
Rr569407	regulatory region 569407	1482 bp proximal
Tssr27298	transcription start site region 27298	1537 bp downstream