rs256822347 SNP Detail

Summary

• ID
  rs256822347
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94924217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGTTTT TGTTTTGTTT
  TGGCGATACT GATTATTGGA CGTTGGGAGT CGCACACGCT TGGCAGGTGC ACTCGTAACA
  CTGAAGCTAC TCTATACCCT ATCACTTTTT GGGACAGGGT TTCCACTAAG TTGTCCTGCC
  TGCCTAGTAA CTAGGGCTAC ACTGTTGCGC CATCAGGCCC AGGTTTGGGT AAAGCTTTTA
  W
  AAGAAGGCTC TGTTACCTCC CCTTGGACTC CCATAGCAGT GGATCCAAAA AATTCAGGCT
  TATGTATGGG AGGAATCTTG GAACCACTAC ATTCCACATG ATGACATCAG ACAAATCGTT
  CTACCTCCCT AAACCTATTG TCTCATGAAT AAAATGGTAA CTATAATATC CACCTGCCAA
  GATTATTTTT GTGAGCATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358893714	MGP_WTSI_3_94820828	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256822347					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358893714	MGP_WTSI_3_94820828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94924217 () rs orientation: forward

Symbol	Name	Function Class
4930481B07Rik	RIKEN cDNA 4930481B07 gene	within coordinates
Cpgi13494	CpG island 13494	123 bp distal
Rr367477	regulatory region 367477	79 bp downstream
Rr580781	regulatory region 580781	1679 bp distal
Rr580782	regulatory region 580782	1149 bp distal
Rr580783	regulatory region 580783	within coordinates
Rr580784	regulatory region 580784	361 bp distal
Rr580785	regulatory region 580785	1879 bp proximal
Tssr30486	transcription start site region 30486	1155 bp downstream
Tssr30487	transcription start site region 30487	1121 bp downstream
Tssr34413	transcription start site region 34413	1660 bp upstream
Tssr34414	transcription start site region 34414	1444 bp upstream
Zfp687	zinc finger protein 687	1458 bp upstream