rs256815072 SNP Detail

Summary

• ID
  rs256815072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155380898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCTTCT GTCAGCCACC
  TGGGGGCACT GCTTGGCTAG ACCCTCTTAG GGGTATAATC CTGGCTCTAG GTATGTGTGA
  GGTCCAGTGT GAGGTTTTGA GTTCTCACAA AGACTATTCC TTGTTCCCCT GCCTTGCTCT
  ACCTGGGTAG TGTGGGGCTC ATGGGAAGAC CCAAACCTAT TTCTCTCAGG GCCTCAATTA
  Y
  TGGAGCAAAC ACCAATTCCA AGCTCTTAGT GAAAGGGTAC ACAAACCACA GCAGAAGGTT
  AACCCTAGTT CATTACCCAC CCCTCCACCC TCTTTTGTGT GTGAACTTTT AGTGGAACAT
  AGCTGCACCC ACTGGCACAC AAACTAACTG TGGCTTCTGA GTCACAATGG CAGCATTGAA
  GGCTGCAACA GAGGCGAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321441574	CHEV_4_154670550	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256815072					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155380898 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prkcz	protein kinase C, zeta			Intron
				Noncoding-Transcript-Variant
Rr606443	regulatory region 606443			83 bp distal
Rr606444	regulatory region 606444			168 bp distal
Rr606445	regulatory region 606445			552 bp proximal
Rr606446	regulatory region 606446			849 bp proximal