rs256769347 SNP Detail

Summary

• ID
  rs256769347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119492862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAGTAA GAAGGTAAAA
  TGGTGGGATT ATAAATAACA TTATTTAACC CTGTTTTCCA AACATTCAGA CGTCTTATTA
  CTTTTCTAAC AATACTACAA CTTCGTGTTT TGTTTAATAA TTTCTTACAA GAAACTCGGT
  CAAACTCAGT AACCGGGTGA CGTCGGTCCG AAGCTAACTG TGAGTTTTTA ATAAGATATT
  Y
  ACACCGCTCC TAGCAGTATG ACTGTACTAC TGAGTACAGA AACGACTGTT CAACCTAGGG
  CTTCCCATGT GCCAGCAACT ATTCTCCGTG TGTTTTTACT GACTTCTCAC GATAATCCTG
  ACCCTGAGAC AGGTACTTCT AGTATTATTC CAATTACAAA GACTAAAAAA AAGGAGATTC
  CACAATTAAA TAATTATTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss355434314	MGP_WTSI_2_119488117	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs256769347					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355434314	MGP_WTSI_2_119488117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119492862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12124	CpG island 12124			191 bp proximal
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1			Intron
				Noncoding-Transcript-Variant
Rr397235	regulatory region 397235			291 bp upstream
Rr563557	regulatory region 563557			within coordinates
Rr563558	regulatory region 563558			407 bp proximal
Tssr25825	transcription start site region 25825			375 bp downstream