rs256673686 SNP Detail

Summary

• ID
  rs256673686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133250641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGGGAC CTCCTCTGCT
  CGGCTCCTCC CCGGCCTTTC CTGAGCCCCG GGTGCCGCCG GCCGCACACC CACGCGTGGG
  CGGCCTCCGC GCCTCTGTCT CCCGCGGGGG CCGCGTAGGC ACTTGGAAAC TCTGCGCCCT
  CCTGCGCGCT CCAGGGGCCC CTGGCTCCCC GCGCTCCCGC TGCCAGCACC TCACCAGTCG
  Y
  CTCCCCACTC GCCCCCACAC CCTGCCACCC CCTTCCCTGT CGCCCAGCCA AGCCGCTCCC
  CATTTCCCCA AAGGCCGTGC CGGGAGAGCT AGAGGGGCCT GGGCGCTAAA GTCTCCACTC
  TGCAGCAATC CGGCGGCGCC GGGGCTCTCC CCGCCCAGGC CCACCTTCTG TTTACTTTGG
  CCACGTGGGC CGCGCAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359791694	MGP_WTSI_3_133207844	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256673686					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359791694	MGP_WTSI_3_133207844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133250641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13849	CpG island 13849	within coordinates
Gm42567	predicted gene 42567	within coordinates
Rr585564	regulatory region 585564	1271 bp distal
Rr585565	regulatory region 585565	523 bp distal
Rr585566	regulatory region 585566	1245 bp distal
Rr585567	regulatory region 585567	within coordinates
Rr585568	regulatory region 585568	206 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron
Tssr35764	transcription start site region 35764	616 bp upstream
Tssr35765	transcription start site region 35765	567 bp upstream
Tssr35766	transcription start site region 35766	468 bp upstream
Tssr35767	transcription start site region 35767	214 bp upstream
Tssr35768	transcription start site region 35768	249 bp downstream
Tssr35769	transcription start site region 35769	437 bp downstream