rs256652601 SNP Detail

Summary

• ID
  rs256652601
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:16362574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTGTTT CCCCTCTGGA
  TTCTCATCCC TTGGAGCTCA GAGGCTCTTC CCTGTGCGCC GCGGAAGGGA TGGATGGATG
  AACAATCTGA TGACAGTCAG GGATGGCAGG TCGCCCCGTG CCAAGGGAAA ACGCCTTGTG
  TCTGCACATC CCTCCTTCAG GCTATCCTCA CTAGTTTTCT CATTGTGGGG TTACTAAGTG
  K
  ATGCAGTAGA AGCAGCGGGG TTCAGGGATA GAGAAGAGGT GGAGAAGATG GGGACCAGTC
  GTGCCTATGA GGACAAGCCC TGGCCCCATT GTCCTCTGCC TGTCTGTTTC ACAGACAGGC
  CCCAACATGC CAGCAGTTCC TCAGGGTTTC TTGACACTGT CCCTGGAGGA GAAGGGCCTC
  CAGATACTTG CAATTGGCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353207049	MGP_WTSI_2_16279390	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256652601					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353207049	MGP_WTSI_2_16279390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16362574 () rs orientation: forward

Symbol	Name	Function Class
Plxdc2	plexin domain containing 2	Intron
Rr372823	regulatory region 372823	within coordinates
Rr552173	regulatory region 552173	1449 bp distal
Rr552174	regulatory region 552174	1870 bp distal
Rr552175	regulatory region 552175	636 bp distal
Rr552176	regulatory region 552176	within coordinates
Rr552177	regulatory region 552177	281 bp distal
Rr552178	regulatory region 552178	1626 bp proximal
Rr552179	regulatory region 552179	1766 bp proximal
Tssr16299	transcription start site region 16299	1742 bp downstream
Tssr16300	transcription start site region 16300	1710 bp downstream
Tssr16301	transcription start site region 16301	1680 bp downstream
Tssr16302	transcription start site region 16302	1664 bp downstream
Tssr16303	transcription start site region 16303	1472 bp downstream
Tssr16304	transcription start site region 16304	1447 bp downstream
Tssr16305	transcription start site region 16305	1406 bp downstream
Tssr16306	transcription start site region 16306	1376 bp downstream
Tssr16307	transcription start site region 16307	1277 bp downstream
Tssr16308	transcription start site region 16308	1148 bp downstream
Tssr16309	transcription start site region 16309	1093 bp downstream
Tssr16310	transcription start site region 16310	1059 bp downstream
Tssr16311	transcription start site region 16311	1021 bp downstream
Tssr16312	transcription start site region 16312	968 bp downstream