rs256590949 SNP Detail

Summary

• ID
  rs256590949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:16950066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTGCCC CTTAGCCCGT
  AGTTTACACA TCCAGTGACC CTCCACTGGA GAGAACTGAC CCCCCCACCC CTTAGCCCGT
  AGTTTACACA TCCAGTGACC CTCCACTGGA GAGAACTGAC CCCCCCTGCC CCTTAGCCCG
  TAGTTTACAC ATCCAGTGAC CCTCCACTGG AGAGAACTGA CCCCCCCCCA CCCCTTAGCC
  Y
  GTAGTTTACA CATCCAGTGA CCCTCCACTG GAGAGAACTG ACCCCCCCCC CCCCGCCCCT
  TAGCCTGTAG TTTACACATC CAGTGACCCT CCACTGGAGA GAACAGATTC TTCCTTTTCC
  AGAAGATTTT TCTTACAAAC TCAGTTCTGG TTACTGGTGG GACTTTTATC CATTTCCAAG
  CTCTGATCTG GAATTTGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367512265	MGP_WTSI_6_16900067	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs256590949					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367512265	MGP_WTSI_6_16900067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:16950066 () rs orientation: forward

Symbol	Name	Function Class
Gm67421	predicted gene, 67421	within coordinates
Rr626731	regulatory region 626731	926 bp distal
Rr626732	regulatory region 626732	880 bp distal