rs256569100 SNP Detail

Summary

• ID
  rs256569100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGTTGGAA ATGCCTTTTC
  TTATACAAAC GATGGCAGAT GAACACTGCG CAGGATCAAT TAGTGAGTGA ACTGCTCTTC
  CTTTCCTGAA GGTTGGGAGG CAGGGAGCGA ATGGGTCACC AACAACCCGG ATAGCCAAAT
  CGCCGCTTTC CCATTTCAAA CCGTTTAAGT CTTTGGGTAG ATTCAAGTCG CTGGGAAACA
  R
  GTGGGCTGCC TGGCACTAGC TTCTTAACCA AGCTATCTAG CCTTTGCTTA ACTCTCCCGG
  TCAGGTTTCC AGTGACTAGA CAAGGAATTT CAGAAATGCG TCCTTAAAAA ACCAAGGGCG
  AGGGAGGTGA CCTGAGCTCA GCATCTAGAG AACTTGTTTG TGGAGAGAGA AGGAAGAGGT
  CAAAGCTGGG AGGAAAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812328	CHEV_6_67484471	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256569100					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	1069 bp distal
Cpgi17512	CpG island 17512	173 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	1171 bp upstream
Rr368087	regulatory region 368087	1104 bp downstream
Rr631666	regulatory region 631666	1182 bp distal
Rr631667	regulatory region 631667	681 bp distal
Rr631668	regulatory region 631668	314 bp proximal
Rr631669	regulatory region 631669	757 bp proximal
Rr631670	regulatory region 631670	1308 bp proximal
Rr631671	regulatory region 631671	1309 bp proximal
Rr631672	regulatory region 631672	1481 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1867	transcription start site region 1867	1936 bp upstream
Tssr1868	transcription start site region 1868	1900 bp upstream
Tssr1869	transcription start site region 1869	1139 bp upstream
Tssr1870	transcription start site region 1870	1008 bp downstream
Tssr1871	transcription start site region 1871	659 bp downstream
Tssr1872	transcription start site region 1872	295 bp downstream
Tssr61254	transcription start site region 61254	814 bp upstream
Tssr61255	transcription start site region 61255	253 bp downstream
Tssr61256	transcription start site region 61256	717 bp downstream
Tssr61257	transcription start site region 61257	1208 bp downstream
Tssr61258	transcription start site region 61258	1306 bp downstream
Tssr61259	transcription start site region 61259	1351 bp downstream