rs256569067 SNP Detail

Summary

• ID
  rs256569067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137571795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGGGGTT TTTTGGGTGG
  TTTTTTTTTT TTTTTTGCAT AATTCTGCAT AATTTTATCA TTCAGGTAGT AGGGAATGAC
  AACAGTTGGT AAATAACACC ATTGAGGTTC AAAGATCTTG ATTGAAAGTA AGTTGGAATA
  TTGATCATCA GATTTTTATT TATTTTTTGC CTTTTAGGTA CTTGAGTTGG CAGGAAATGC
  R
  TCAAAAGACT TAAAGGTAAA GCGTATCACC CCTCGTCACT TGCAGCTTGC TATACGTGGA
  GATGAAGAAT TGGATTCTCT GATCAAAGCT ACCATTGCTG GTGGTGGTAT GTCATCCCTA
  AACTCCTAAC ATTCTATTTA AGAAGAAAAT TCCTACACTC CCATTGTTTC TAGAAGAGAT
  TTCAGTACAG GGTGCTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894908	MGP_WTSI_3_137528998	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256569067					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894908	MGP_WTSI_3_137528998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137571795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14			1006 bp upstream
Gm43403	predicted gene 43403			1708 bp upstream
H2az1	H2A.Z variant histone 1			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr367565	regulatory region 367565			1527 bp downstream
Rr398061	regulatory region 398061			29 bp downstream
Rr585997	regulatory region 585997			1881 bp distal
Rr585998	regulatory region 585998			1537 bp distal
Rr585999	regulatory region 585999			1718 bp distal
Rr586000	regulatory region 586000			1411 bp distal
Rr586001	regulatory region 586001			1440 bp distal
Rr586002	regulatory region 586002			1300 bp distal
Rr586003	regulatory region 586003			799 bp distal
Rr586004	regulatory region 586004			262 bp distal
Rr586005	regulatory region 586005			202 bp proximal
Rr586006	regulatory region 586006			1151 bp proximal
Rr586007	regulatory region 586007			1721 bp proximal
Tssr31912	transcription start site region 31912			1509 bp downstream
Tssr31913	transcription start site region 31913			1470 bp downstream
Tssr31914	transcription start site region 31914			1443 bp downstream
Tssr31915	transcription start site region 31915			913 bp downstream
Tssr31916	transcription start site region 31916			163 bp downstream
Tssr31917	transcription start site region 31917			96 bp downstream
Tssr31918	transcription start site region 31918			1724 bp upstream
Tssr31919	transcription start site region 31919			1773 bp upstream
Tssr31920	transcription start site region 31920			1825 bp upstream
Tssr31921	transcription start site region 31921			1844 bp upstream
Tssr31922	transcription start site region 31922			1924 bp upstream
Tssr35855	transcription start site region 35855			1703 bp upstream