rs256552076 SNP Detail

Summary

• ID
  rs256552076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGTGAC ACAAAATAGA
  GGTCAGCTCA ACATTGCACT GAGTCGATCA TGTCTTCCCC ATGGGACTCA CGAGGGCTCA
  GGCACACTGT GGTCGATCTG GGGATGCAGA GCAAGTCTAT TGAAGTCCCA GCTCTTGAGC
  TCTTGTTTGC CTTATTCTGT ATTCCCCCCC GTCCCCCGCT CTCCCCCCAC CCAAGACCCT
  R
  AACAGTTTGT GTCAATGGTG CAGCACTAGT TGGCAGGTGA GGGATTCTGG TAACACCCAA
  AAAGCTTAGA AAGGATTTCA AAGTTCCAGG TAGAAAGAAA AACTCCTCCT CAAACGATAT
  AAGCAATAAT ACATTCTGTT ACCATAAATG AAGTTACAAT CAAGTAATCA GATGTGATTA
  AACTGTTTAC CTCCTAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676668	MGP_WTSI_3_82833628	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256552076					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676668	MGP_WTSI_3_82833628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937013 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1992 bp upstream
Tssr29661	transcription start site region 29661	1158 bp downstream
Tssr29662	transcription start site region 29662	1109 bp downstream
Tssr29663	transcription start site region 29663	1092 bp downstream
Tssr29664	transcription start site region 29664	609 bp downstream
Tssr29665	transcription start site region 29665	570 bp downstream
Tssr29666	transcription start site region 29666	534 bp downstream
Tssr29667	transcription start site region 29667	491 bp downstream
Tssr29668	transcription start site region 29668	492 bp upstream
Tssr29669	transcription start site region 29669	536 bp upstream
Tssr29670	transcription start site region 29670	580 bp upstream
Tssr29671	transcription start site region 29671	1124 bp upstream
Tssr29672	transcription start site region 29672	1227 bp upstream
Tssr29673	transcription start site region 29673	1255 bp upstream
Tssr29674	transcription start site region 29674	1304 bp upstream
Tssr29675	transcription start site region 29675	1314 bp upstream
Tssr29676	transcription start site region 29676	1324 bp upstream
Tssr29677	transcription start site region 29677	1341 bp upstream
Tssr29678	transcription start site region 29678	1420 bp upstream
Tssr29679	transcription start site region 29679	1464 bp upstream
Tssr29680	transcription start site region 29680	1487 bp upstream
Tssr29681	transcription start site region 29681	1589 bp upstream
Tssr29682	transcription start site region 29682	1612 bp upstream
Tssr29683	transcription start site region 29683	1655 bp upstream
Tssr29684	transcription start site region 29684	1680 bp upstream
Tssr29685	transcription start site region 29685	1721 bp upstream
Tssr29686	transcription start site region 29686	1787 bp upstream
Tssr29687	transcription start site region 29687	1885 bp upstream
Tssr29688	transcription start site region 29688	1909 bp upstream
Tssr29689	transcription start site region 29689	1935 bp upstream
Tssr29690	transcription start site region 29690	1965 bp upstream
Tssr33800	transcription start site region 33800	1396 bp downstream
Tssr33801	transcription start site region 33801	1741 bp downstream
Tssr33802	transcription start site region 33802	1877 bp downstream