rs256488550 SNP Detail

Summary

• ID
  rs256488550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87001823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTGTGT TTTTAACGGG
  TTGCTTTTTG TAATTGGTGG ATCAAGTTCT GAGCTTTATC TAACCCTTCC ATTGCAATCA
  ATTCTCAAAC TTTTAAAAAA TATTGAGCAA ATTATCTTAA AGAAAATACA AGTTAAACAT
  CCTGTTAAAG GTAAGTTTTA GGAAGTTATG AGGTTGTTGA ACTTTAACAT ATTTTAGATA
  Y
  TGTATAAATT ATGGTCTAGC TTTAACATTT CTTTTTTCAG AGGATCAAAG GAAAACAGCT
  TTTCCCTTTG TAACATAACC TGAAGTACAT TGATGGTAGT AGCATTTACA ATTTTCAAGT
  TACTGAACTT TTTTTCATAA CCAAGGGCTT GAAAAACATT ATTTTTAACC ATGATTTTCA
  ATATTAACTG CTTTTTATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772681	CHEV_11_86924499	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256488550					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87001823 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			795 bp distal
Gm73625	predicted gene, 73625			737 bp downstream
Rr453747	regulatory region 453747			1475 bp distal
Rr453748	regulatory region 453748			487 bp distal
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103905	transcription start site region 103905			1802 bp downstream
Tssr103906	transcription start site region 103906			1758 bp downstream
Tssr103907	transcription start site region 103907			1723 bp downstream
Tssr103908	transcription start site region 103908			1414 bp downstream