rs256486304 SNP Detail

Summary

• ID
  rs256486304
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13839344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCCCT GCTGATCTTT
  GATTTGGCAC GCTAGCTGGG GAGAGAAAAA GAAAGAATGA AAATTAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAGGAAAGA AAAAAAATTA AGCACAGTCA AAAATCTTGC CAGTGGGGGA
  AGAAGGGAAG CGGGTTGGGG CAGCCTTGTC TTTGTCAGTG GTCATCTGTT CTTGAAGGCA
  M
  GCAGATCTGC GTTTAAGGAA GGAGAGGCTA AGTTCAGGCG ACAAGTGCAA AACCGATCTA
  CACTCATTCT ACCTTCTCGA ACGTGACTAA TGGATCAGGA GTACAAAGAT TTTACATGGC
  TGTTCCTCGC ATCCCACCCC AAGCAACAAG ACTCTCCTTT CTCTTCCAAG CTGGGATGAC
  CAATAGGTTG CTGATGTCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440155	MGP_WTSI_6_13789345	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256486304					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440155	MGP_WTSI_6_13789345	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13839344 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17167	CpG island 17167			165 bp distal
Gpr85	G protein-coupled receptor 85			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr626594	regulatory region 626594			1614 bp distal
Rr626595	regulatory region 626595			401 bp distal
Rr626596	regulatory region 626596			587 bp proximal
Tssr54956	transcription start site region 54956			644 bp downstream
Tssr54957	transcription start site region 54957			603 bp downstream
Tssr59842	transcription start site region 59842			1238 bp upstream
Tssr59843	transcription start site region 59843			903 bp upstream
Tssr59844	transcription start site region 59844			727 bp upstream
Tssr59845	transcription start site region 59845			656 bp upstream
Tssr59846	transcription start site region 59846			135 bp upstream
Tssr59847	transcription start site region 59847			5 bp upstream
Tssr59848	transcription start site region 59848			79 bp downstream
Tssr59849	transcription start site region 59849			141 bp downstream
Tssr59850	transcription start site region 59850			174 bp downstream
Tssr59851	transcription start site region 59851			550 bp downstream
Tssr59852	transcription start site region 59852			571 bp downstream