rs256481621 SNP Detail

Summary

• ID
  rs256481621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19319720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAATTCA TAGGTAATTC ATTTTAGATT
  TACTGACAAG GTCATGTATT TTCACATAAT AAAAGATATT TGTTCTCAAG TCCTAAGAAA
  GTCTAGTTCC TGTAATATTA GGGTCCATGT CCTGTTCTTG CGACTGAGCG AATGAGCTGT
  Y
  CAGAAACAAA GCCTCTCCGC ATCCAACCTC TCACCTCCCA TGGCACCCAG CAAGTTACTT
  TTGATAAAGA GCCTCTCACG AAACTCTCAA TCGAGAAGTT AGCAAATATG TATTAAACTC
  TAGTTACGCA GCAGGCTCCA TGTTAATGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678293	CHEV_3_19165556	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256481621					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19319720 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573966	regulatory region 573966			1755 bp distal
Rr573967	regulatory region 573967			435 bp distal
Tssr32690	transcription start site region 32690			617 bp upstream
Tssr32691	transcription start site region 32691			582 bp upstream
Tssr32692	transcription start site region 32692			551 bp upstream
Tssr32693	transcription start site region 32693			533 bp upstream
Tssr32694	transcription start site region 32694			447 bp upstream