rs256463167 SNP Detail

Summary

• ID
  rs256463167
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40620189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGACAC AGTGCCTGAT
  AAAGGCAATT TTGAAGGTAG AGAGGGTTAT TTTGGTTCAT GGTGTCAGAG GTTTCAGTCC
  ACAGCCATCT GGCTCTGTGT TTTGTTGAGG AGAGCACTGG GGAGAGGCTG CTGTGAGACA
  GGCAGAGACT TATTGTGATA GCTATAGAAC AAAGTGGCTT ACTTCCTTAT AGCCAAGAGG
  A
  AGTGAGGGAG AGAGAGAGAG AGAGAGAGAG AGAGGGAGAG AGAGAATGAG GTCGATGCTG
  GGTCCAAATG TCTTCCTCAA GAGCATTCTT CCAGTGACCC CACTTCTCTC CATGCTCTTC
  AAGGCTCCAC TAACCCCCAG TGGTATCGCA TGCTGGCAAC CAAGTCTTCA GCATGCGGGC
  ACTCGGCTGG CATTTAGATC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss357666388	MGP_WTSI_3_40469681	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs256463167					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357666388	MGP_WTSI_3_40469681	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40620189 () rs orientation: forward

Symbol	Name	Function Class
Intu	inturned planar cell polarity protein	Intron
Rr575841	regulatory region 575841	432 bp proximal
Rr575842	regulatory region 575842	828 bp proximal