rs256435173 SNP Detail

Summary

• ID
  rs256435173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77646190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GACACTCGCC ATCTGAGTGA
  Y
  CTCCAGAGCC ATAGGAAGCA AAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320358142	CHEV_2_77653903	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256435173					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77646190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11837	CpG island 11837	23 bp proximal
Rr559844	regulatory region 559844	within coordinates
Rr559845	regulatory region 559845	960 bp proximal
Rr559846	regulatory region 559846	1142 bp proximal
Rr559847	regulatory region 559847	1211 bp proximal
Tssr24865	transcription start site region 24865	747 bp downstream
Tssr24866	transcription start site region 24866	834 bp downstream
Tssr24867	transcription start site region 24867	864 bp downstream
Tssr24868	transcription start site region 24868	890 bp downstream
Tssr24869	transcription start site region 24869	912 bp downstream
Tssr24870	transcription start site region 24870	1033 bp downstream
Tssr24871	transcription start site region 24871	1579 bp downstream
Tssr24872	transcription start site region 24872	1645 bp downstream
Tssr24873	transcription start site region 24873	1822 bp downstream
Zfp385b	zinc finger protein 385B	Intron