rs256405904 SNP Detail

Summary

• ID
  rs256405904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103204236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggagctaa cttaactcaa cttctccttt
  tacaggcagg gaaactagag tccaaagtgg tgatgtgatt tacctaatag catacttcgt
  tagtagcaag actcctgacc cttgtcttcc AGGTTAGTGC TGAGTCTTCA TCACAGCGAA
  Y
  GCCTTTTTGT TGTACTTGGA TGAGTGCCTA GGTTCTTAGA TTACTCATTT AAGAATGAAT
  CAACAGCAAA CAAAGAAAAG TCTTGTTCCA GAGACATGTT ATATAGTAAC TTCCACAACA
  CACACGCTGT GCCCAAGTTT TGTTTTGAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321236683	CHEV_4_103019644	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256405904					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103204236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			621 bp distal
Rr596393	regulatory region 596393			710 bp distal
Rr596394	regulatory region 596394			within coordinates
Tssr38109	transcription start site region 38109			1664 bp upstream