rs256322660 SNP Detail

Summary

• ID
  rs256322660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152020788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATACACA CGCACCCACA
  TACACACGCA CCCACATACA CAAGCACACA CATACACACG CACCCACATA CACACGCACC
  CACATACACA CGCACCCACA TACACAAGCA CACACATACA CACGCACCCA CATATACAAG
  CACACACATA CACACGCACC CACATACACA TGCACCCACA TGCACACGCA CGCACACACA
  Y
  ACATACACAC GCACCCACAC ACACCCACAT ACACATGCAC CCACATACAC ATGCACCCAC
  ATGCACACGC ACCCACATAC ACACATACAA CTTGTACACA CATATGTGTG AGTACAAATA
  TTTTTTTAAA TACCTAATGC CTTTAATCCC AGCCCTCGGT AGGCAGAGGC CAGCAGATCT
  ATGAGTTCAA GGCCAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360264015	MGP_WTSI_3_151978115	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256322660					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360264015	MGP_WTSI_3_151978115	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152020788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			within coordinates
Rr587524	regulatory region 587524			442 bp proximal
Rr587525	regulatory region 587525			660 bp proximal
Rr587526	regulatory region 587526			704 bp proximal
Rr587527	regulatory region 587527			1123 bp proximal
Rr587528	regulatory region 587528			1415 bp proximal