rs256278730 SNP Detail

Summary

• ID
  rs256278730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69553921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTAGGG AAGGGGGAGG
  CGCAGCGCGA GGGCCTGTCA GGTTAGGGTT AGGGAGGGAC GGGCGCAGAG CCAGGATCCC
  CGGGAATAAA ATCGACCGCG GGCTCCGGTC CTCCCGACCT TTTCCTCCCG TAGGACAGCG
  GCTGGCGTGC ATGCCTCAGT GACACAGGCC CTTGGTGTTA GGGACACTCC TAAAACTCAA
  R
  TGCGAGATGT TAACCTCAGG GCCTTAGAAG TTTTCTCATG TTCCTGAGCG ACTGGAAGCG
  GCCGGGCCTT TGGGGGAGGA GGATTCTGTT GAGGAGAAGA TGGTTTCTGA ACCCCGTTCG
  CCTTTAGGAG AAACGAACTG ATTTTTTCCG TGTTTCCTCT TGATGTCGAA CAAAGTCAAC
  CGTAGCGGGC ATCCGTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354377105	MGP_WTSI_2_69561634	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256278730					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377105	MGP_WTSI_2_69561634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69553921 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11715	CpG island 11715			within coordinates
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr397018	regulatory region 397018			670 bp downstream
Rr558457	regulatory region 558457			474 bp distal
Rr558458	regulatory region 558458			783 bp distal
Rr558459	regulatory region 558459			within coordinates
Tssr18132	transcription start site region 18132			737 bp downstream
Tssr18133	transcription start site region 18133			701 bp downstream
Tssr18134	transcription start site region 18134			509 bp downstream
Tssr18135	transcription start site region 18135			484 bp downstream
Tssr18136	transcription start site region 18136			299 bp downstream
Tssr24445	transcription start site region 24445			794 bp upstream