rs256248700 SNP Detail

Summary

• ID
  rs256248700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105739098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCCTGG CTTTGCGTCT
  GATTGAAGTC CAGTTTCTTT CTGTCCCAGC AGAAAGCAAC ATTGCCTTTG GTGTTTTACG
  ACAATCAAAC GCGCAAAGCA CCTAAGGTCT CTCGGGCGCT GCAAACATCT CTTCCCCATC
  GTTCTCATCT TCACGGCAGT TACACGTGTG TGTGCAGTTT TTCTTCATAA GAAAAAGGAC
  Y
  CTCAAAACGT CCCATACAAA TGTCCAATCA CTAATCCGTA GGACTGTATG GGACTTCTCC
  AAGATCGAAC GCTTGGAATT TTCTTAAACT CTCCGAGGAA CTGGATTCTC AACGCGTCTC
  TTAATGGTTT AATGCACTGT GCTCGCGGTG CCCGGAGCTG TCAGTGGTAT CTTTTTTCCT
  GAGCTAGAGT TGGAGTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392354470	MGP_WTSI_14_105900881	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	C	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256248700					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	C	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392354470	MGP_WTSI_14_105900881	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105739098 () rs orientation: forward

Symbol	Name	Function Class
4930449E01Rik	RIKEN cDNA 4930449E01 gene	within coordinates
Gm62338	predicted gene, 62338	1916 bp upstream
Gm62353	predicted gene, 62353	704 bp downstream
Rr497225	regulatory region 497225	1814 bp distal
Rr497226	regulatory region 497226	1434 bp distal
Rr497227	regulatory region 497227	within coordinates
Rr497228	regulatory region 497228	417 bp proximal
Tssr127089	transcription start site region 127089	1811 bp downstream
Tssr127090	transcription start site region 127090	1618 bp downstream