rs256224087 SNP Detail

Summary

• ID
  rs256224087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148985781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGGCCGC TCCCGCCCGC
  CCCGCTCCCT CCTGCCAAAC TGTTACCCTG AGTGTTACCG TCAGGAGCAA TGACATCAGG
  ATTTTAAAAC AACTTGTTAT TCGGGGAGTA ATCAGTTGCA ATTAGGCATT AATTAAGTAT
  TATGAAAGTT GATTATTTAA GTGAATTCGG CTTTCGACTC TCCGACTATG GTGAGTACCG
  R
  CAGCGGGCGG GGGAGGGCCG GGCCGGGCCG GAGCGGCGAC CCCTGCGCGC TCGGGATGGG
  ATGTGGGGGT GGGGGGCCCT CGGCCTGGCG GGCCCGATCC CCAGCCGAGC GACAGCCACG
  GGCAGTTTCT GTTTTAGTTG GTGGAACTCG GAGCTGCTGG GAGCGTGCGG GCCGGAGCGT
  GAGAGCGAGC GTGAGGCGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321423644	CHEV_4_148275433	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256224087					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148985781 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Cpgi15314	CpG island 15314	within coordinates
Rr604790	regulatory region 604790	565 bp distal
Rr604791	regulatory region 604791	1751 bp proximal
Tssr40309	transcription start site region 40309	122 bp downstream
Tssr40310	transcription start site region 40310	13 bp downstream